CyVerse Learning Institute Foundational Open Science Skills 2020
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Before FOSS Starts

  • Before FOSS Starts
  • Pre-FOSS Setup

Key Information

  • Schedule
  • Instructors
  • Glossary & Acronyms

Getting Started

  • About FOSS
  • Code of Conduct
  • Open Science Introductory Activity
  • Collaboration Culture and Roles

Essential Skills

  • Command Line and the Unix Shell
  • Basics of Linux

Reproducible Science

  • Introduction to Reproducible Science
  • Communication
  • GitHub
  • CI/CD
  • Websites & Documentation

Data Management

  • Data Management Overview
  • FAIR Data
  • Data Management Plans (DMP)
  • Data Management Tools

Using CyVerse

  • About CyVerse
  • Accessing Data Store
  • Discovery Environment - Data Management
  • Discovery Environment - Data Analysis
  • Discovery Environment - Tools & Apps
  • Discovery Environment - VICE

Cyberinfrastructure

  • Introduction to Cloud Computing
  • Atmosphere
  • Research Cyberinfrastructure associated with CyVerse
  • Other Cyberinfrastructure Projects

Containers

  • Introduction to containers
  • Launching a Docker app on Atmosphere
  • Introduction to Docker
  • Advanced Docker

Using RStudio

  • Introduction to R & RStudio
  • RStudio with Version Control

GitHub Action and EHT

  • GitHub Action and EHT Demo

Experimental

  • GitHub Pages - a quick start
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